Software & Resources

FUMA

Use FUMA for post-GWAS functional annotation of genetic variants

MAGMA

MAGMA is a tool for gene analysis and generalized gene-set analysis of GWAS data. It can be used to analyse both raw genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis.

TATES

Use TATES for multivariate GWAS based on P-values from GWAS.

JAG

Use JAG for gene-set analysis in GWAS datasets.

JAMP

Use JAMP for multivariate GWAS analysis, based on raw genotypic data.

Prob2plinkbig

Use Prob2plinkbig to convert large MACH probability files to PLINK dosage files.

Curated geneSets

Expert curated gene-sets that can be used for gene-set analysis.