Software & Resources

FUMA GWAS

FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results.

GeneSets

Expert curated gene-sets that can be used for gene-set analysis.

JAG

Use JAG for gene-set analysis in GWAS datasets.

JAMP

Use JAMP for multivariate GWAS analysis, based on raw genotypic data.

MAGMA

MAGMA is a tool for gene analysis and generalized gene-set analysis of GWAS data. It can be used to analyse both raw genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis.

Prob2plinkbig

Use Prob2plinkbig to convert large MACH probability files to PLINK dosage files.

TATES

Use TATES for multivariate GWAS based on P-values from GWAS.

Summary Statistics

Summary statistics from published GWAS by CTG can be dowloaded here.